PDB Editor

About the tool

The Protein Data Bank (PDB) is a database for the three-dimensional structural data of large biological molecules, such as proteins and nucleic acids. The data is available for download in the PDB format which is a text format that describes each atom in a molecule in three dimensional space.
This tool is a simple editor for PDB files.
Demo

untitled.pdb — PDB Editor
HEADER    NONAME 22-Apr-10                                              NONE   1
TITLE                                                                   NONE   2
AUTHOR    Chemical Structure Services at http://cactus.nci.nih.gov      NONE   3
REVDAT   1  22-Apr-10     0                                             NONE   4
ATOM      1  C           0      -2.561   1.251  -0.000  0.00  0.00           C+0
ATOM      2  C           0      -3.261  -1.161  -0.000  0.00  0.00           C+0
ATOM      3  C           0       1.534   2.629   0.000  0.00  0.00           C+0
ATOM      4  C           0       2.247  -2.176  -0.000  0.00  0.00           C+0
ATOM      5  O           0      -0.438  -2.428   0.000  0.00  0.00           O+0
ATOM      6  O           0       2.994   0.384   0.000  0.00  0.00           O+0
ATOM      7  C           0      -0.016  -1.285  -0.000  0.00  0.00           C+0
ATOM      8  C           0       1.791   0.208   0.000  0.00  0.00           C+0
ATOM      9  C           0      -0.911  -0.194  -0.000  0.00  0.00           C+0
ATOM     10  C           0      -0.403   1.099  -0.000  0.00  0.00           C+0
ATOM     11  N           0      -1.445   1.934  -0.000  0.00  0.00           N+0
ATOM     12  N           0       0.971   1.277  -0.000  0.00  0.00           N+0
ATOM     13  N           0       1.312  -1.048  -0.000  0.00  0.00           N+0
ATOM     14  N           0      -2.286  -0.068   0.000  0.00  0.00           N+0
ATOM     15  H           0      -3.552   1.680   0.004  0.00  0.00           H+0
ATOM     16  H           0      -3.503  -1.433   1.028  0.00  0.00           H+0
ATOM     17  H           0      -4.168  -0.840  -0.514  0.00  0.00           H+0
ATOM     18  H           0      -2.839  -2.025  -0.514  0.00  0.00           H+0
ATOM     19  H           0       1.673   2.965   1.028  0.00  0.00           H+0
ATOM     20  H           0       2.495   2.623  -0.514  0.00  0.00           H+0
ATOM     21  H           0       0.851   3.307  -0.514  0.00  0.00           H+0
ATOM     22  H           0       2.478  -2.456  -1.028  0.00  0.00           H+0
ATOM     23  H           0       3.164  -1.888   0.513  0.00  0.00           H+0
ATOM     24  H           0       1.793  -3.024   0.514  0.00  0.00           H+0
CONECT    1   14   11   15    0                                         NONE  29
CONECT    2   14   16   17   18                                         NONE  30
CONECT    3   12   19   20   21                                         NONE  31
CONECT    4   13   22   23   24                                         NONE  32
CONECT    5    7    0    0    0                                         NONE  33
CONECT    6    8    0    0    0                                         NONE  34
CONECT    7    9   13    5    0                                         NONE  35
CONECT    8   12    6   13    0                                         NONE  36
CONECT    9   10    7   14    0                                         NONE  37
CONECT   10    9   12   11    0                                         NONE  38
CONECT   11   10    1    0    0                                         NONE  39
CONECT   12   10    8    3    0                                         NONE  40
CONECT   13    7    4    8    0                                         NONE  41
CONECT   14    9    1    2    0                                         NONE  42
END                                                                     NONE  43

1
HEADER    NONAME 22-Apr-10                                              NONE   1
2
TITLE                                                                   NONE   2
3
AUTHOR    Chemical Structure Services at http://cactus.nci.nih.gov      NONE   3
4
REVDAT   1  22-Apr-10     0                                             NONE   4
5
ATOM      1  C           0      -2.561   1.251  -0.000  0.00  0.00           C+0
6
ATOM      2  C           0      -3.261  -1.161  -0.000  0.00  0.00           C+0
7
ATOM      3  C           0       1.534   2.629   0.000  0.00  0.00           C+0
8
ATOM      4  C           0       2.247  -2.176  -0.000  0.00  0.00           C+0
9
ATOM      5  O           0      -0.438  -2.428   0.000  0.00  0.00           O+0
10
ATOM      6  O           0       2.994   0.384   0.000  0.00  0.00           O+0
11
ATOM      7  C           0      -0.016  -1.285  -0.000  0.00  0.00           C+0
12
ATOM      8  C           0       1.791   0.208   0.000  0.00  0.00           C+0
13
ATOM      9  C           0      -0.911  -0.194  -0.000  0.00  0.00           C+0
14
ATOM     10  C           0      -0.403   1.099  -0.000  0.00  0.00           C+0
15
ATOM     11  N           0      -1.445   1.934  -0.000  0.00  0.00           N+0
16
ATOM     12  N           0       0.971   1.277  -0.000  0.00  0.00           N+0
17
ATOM     13  N           0       1.312  -1.048  -0.000  0.00  0.00           N+0
18
ATOM     14  N           0      -2.286  -0.068   0.000  0.00  0.00           N+0
19
ATOM     15  H           0      -3.552   1.680   0.004  0.00  0.00           H+0
20
ATOM     16  H           0      -3.503  -1.433   1.028  0.00  0.00           H+0
21
ATOM     17  H           0      -4.168  -0.840  -0.514  0.00  0.00           H+0
22
ATOM     18  H           0      -2.839  -2.025  -0.514  0.00  0.00           H+0
23
ATOM     19  H           0       1.673   2.965   1.028  0.00  0.00           H+0
24
ATOM     20  H           0       2.495   2.623  -0.514  0.00  0.00           H+0
25
ATOM     21  H           0       0.851   3.307  -0.514  0.00  0.00           H+0
26
ATOM     22  H           0       2.478  -2.456  -1.028  0.00  0.00           H+0
27
ATOM     23  H           0       3.164  -1.888   0.513  0.00  0.00           H+0
28
ATOM     24  H           0       1.793  -3.024   0.514  0.00  0.00           H+0
29
CONECT    1   14   11   15    0                                         NONE  29
30
CONECT    2   14   16   17   18                                         NONE  30
31
CONECT    3   12   19   20   21                                         NONE  31
32
CONECT    4   13   22   23   24                                         NONE  32
33
CONECT    5    7    0    0    0                                         NONE  33
34
CONECT    6    8    0    0    0                                         NONE  34
35
CONECT    7    9   13    5    0                                         NONE  35
36
CONECT    8   12    6   13    0                                         NONE  36
37
CONECT    9   10    7   14    0                                         NONE  37
38
CONECT   10    9   12   11    0                                         NONE  38
39
CONECT   11   10    1    0    0                                         NONE  39
40
CONECT   12   10    8    3    0                                         NONE  40
41
CONECT   13    7    4    8    0                                         NONE  41
42
CONECT   14    9    1    2    0                                         NONE  42
43
END                                                                     NONE  43
44

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PDB Editor

About the tool

Demo

See also
