DESeq2 in the browser

DESeq2 is a Bioconductor package for differential gene expression analysis.

Currently, DESeq2/Bioconductor aren't available in webR's binary repository. (webR allows you to run R code in the browser and comes with an R interpreter and default binary package repository.)

To run DESeq2 in the browser, I've compiled the package and its dependencies manually to the format required by webR. Live demo below.

The demo is a simple example of DESeq2 usage. You can paste your own count data, column data, and design formula and immediately see the results.

Demo: In-browser DESeq2

See also

• WebLogo in the browser - Bringing WebLogo to the browser + demo of a pure client side sequence logo maker.
• BLAST WASM - Compiling the BLAST sequence search/alignment tool to WASM.
• Sequence Logo Generator - Create sequence logos from FASTA alignments.
• Genome Browser - Explore the human genome.
• Sequence Alignment Viewer - Open FASTA files in the browser.
• Phylogenetic Tree Editor - An online visual editor for phylogenetic trees (WIP).
• Phylogenetic Tree Builder - Reconstruct phylogenetic trees from protein or DNA/RNA sequence alignments.
• Plasmid Map Generator - A tool to generate plasmid maps from GenBank files.
• WikiPathways: A Wikipedia for biological pathways - An overview of the collaboratively edited structured pathway encyclopedia.
• The RDF model of the Gene Ontology, demystified - An outline of the structure of the Gene Ontology RDF graph and ways to query it.
• The ambitious challenge of finishing the human genome - Generating a complete human genome sequence, chromosome by chromosome.
• Scalable genomic alignment with Progressive Cactus - How progressive alignment makes it possible to efficiently align hundreds to thousands of large genomes.
• GenBank to FASTA - Convert GenBank flat files to FASTA format.
• ABI to FASTA - Convert AB1 files (Applied Biosystems/ABI trace files) to FASTA format.
• Awesome bioinformatics - A curated list of awesome resources on bioinformatics.
• NCBI Taxonomy Browser - A simple tool for viewing the NCBI taxonomy tree.
• What is FASTA and how is it used? - Learn about the FASTA format and its applications.
• FASTA Editor - A FASTA editor for creating and editing FASTA files.
• FASTA Parse Tree Viewer - Visualize the parse tree of FASTA files.
• FASTQ to FASTA Converter - Convert FASTQ files to FASTA format.
• FASTQ Editor - A FASTQ editor for creating and editing FASTQ files.
• Newick Editor - An online editor for phylogenetic trees in the Newick format.
• Newick Parse Tree Viewer - View the parse trees of Newick strings.
• PDB Editor - Edit PDB files online.
• PDB to FASTA - Extract protein/nucleotide sequences from PDB files.
• Bioinformatics Crossword - A daily crossword puzzle for bioinformatics terms.
• Bioinformatics pronunciation guide - A pronunciation guide for bioinformatics terms.
• RDKit WASM - Running RDKit in the browser with WebAssembly.
• Phonetic Analyzer - A web-based phonetic analyzer built on top of Praat.
• Font Parser - An online tool for parsing font files.
• FreeType WASM - A WASM port of the FreeType library.
• WASM WAT Editor - A simple editor for the WebAssembly Text Format (WAT).
• WASM ports - A list of software compiled to/ported to WebAssembly/JavaScript.
• Awesome WebAssembly - A curated list of awesome resources on WebAssembly (WASM).
• Erlang/OTP WASM (Erlang in the browser) - Execute Erlang code in the browser.